Seqliner is a bioinformatics pipeline management framework that comes bundled with multiple pre-built pipelines. For end users, Seqliner makes pipelines transparent and easy to use. For developers, Seqliner addresses two critical issues about pipeline development: customisation and sharing.
Seqliner uses bpipe as its underlying pipeline authoring language, and many of its strengths come from the power and straightforwardness of bpipe and groovy. We also keep deployment in mind to faciliate migration and sharing across sites/institutes, and accordingly provide Docker images and tools to manage large resource files.
Contents: