.. Seqliner documentation master file, created by sphinx-quickstart on Tue Nov 18 14:06:09 2014. You can adapt this file completely to your liking, but it should at least contain the root `toctree` directive. Welcome to SEQLINER ******************* Seqliner is a bioinformatics pipeline management framework that comes bundled with multiple pre-built pipelines. For end users, Seqliner makes pipelines transparent and easy to use. For developers, Seqliner addresses two critical issues about pipeline development: customisation and sharing. .. The problemThe building of a pipeline requires substantial efforts in tweaking the details and making it fail tolerant across multiple data sets. However, different projects and With seqliner, pipelines can Seqliner uses `bpipe `_ as its underlying pipeline authoring language, and many of its strengths come from the power and straightforwardness of bpipe and groovy. We also keep deployment in mind to faciliate migration and sharing across sites/institutes, and accordingly provide Docker images and tools to manage large resource files. Contents: .. toctree:: :maxdepth: 2 quickstart configuration roles Indices and tables ================== * :ref:`genindex` * :ref:`modindex` * :ref:`search`